Package index • MetaVolcanoR

All functions
`calc_vi()`	A function to calculate variance from confidence interval limits
`collapse_deg()`	A function to filter out geneIDs standing for the same gene name
`combining_mv`	A function to draw the 'Combining meta-analysis' MetaVolcano
`cum_freq_data()`	A data formating function for inverse-cummulative DEG distribution
`deg_def()`	A DEG definition function
`diffexplist`	Differential expression results from five studies
`draw_cum_freq()`	A function to visualize the inverse-cummulative DEG distribution
`draw_featurebar()`	A function for feature barplot visualization
`draw_forest`	A function to draw a forest plot from the REM MetaVolcano result
`enrichment_mv()`	Run gene set enrichment analysis on MetaVolcano results
`MetaVolcano-class`	MetaVolcano S4 Class
`plot_mv()`	A MetaVolcano ploting function
`plot_rem()`	A function to plot the Random Effect Model (REM) MetaVolcano
`prepare_deseq2()`	Prepare DESeq2 results for MetaVolcanoR
`prepare_edger()`	Prepare edgeR results for MetaVolcanoR
`prepare_limma()`	Prepare limma results for MetaVolcanoR
`prepare_swish()`	Prepare Swish/fishpond transcript-level results for MetaVolcanoR
`remodel()`	A function to model foldchange variance along several studies This function calculate the REM-summary fold-change
`rem_mv`	Random Effect Model (REM) MetaVolcano
`rename_col()`	A column renaming function merged inputs
`set_degbar_data()`	A function setting data format for DEG barplot visualization
`vaccine_proteomics`	Plasma proteomic response to influenza vaccination (five cohorts)
`votecount_mv`	A function to draw the 'Vote-counting meta-analysis' MetaVolcano

Reference

All functions